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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30044079_30044782_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30044079 - 30044782
Intron Length:
704

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTGACATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTGAAGTAACA
Flanking Amino Acid:
MMPGRMVGVTRDANGKEVYR
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.6
32.5
Major BPS
100
1.24
0.5
100
0
Major PPT
63.8
0.31
1
58.3
41.8
Minor 5ss
31.9
-2.1
3.6
47.6
48
Minor BPS
46.6
-0.2
2.4
69.45
42.6

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533