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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30045361_30046071_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30045361 - 30046071
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATGTTA
5'SS Class:
major
3'SS Sequence:
TTTTGTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTGAATACAT
Flanking Amino Acid:
QTIAVVQTRANYTGVITELK
Intron Amino Acid Position:
334

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.4
0.51
1.1
71.3
34.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
42.1
-0.9
3.3
55.7
43.1
Minor BPS
42.5
-0.4
2.4
71.49
44.8

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533