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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30048679_30056590_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30048679 - 30056590
Intron Length:
7912

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTAC
5'SS Class:
major
3'SS Sequence:
TCTTTTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TTTTCCGTGATA
Flanking Amino Acid:
IARNLLENAGWVTQYTPYQP
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
64.6
35.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
92.4
0.95
0.6
87.6
22.8
Minor 5ss
37.2
-1.4
3.3
46.7
43.5
Minor BPS
66.6
0.52
2
82.09
33.1

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012975
30023988 - 30065520
41533
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352