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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30064804_30064909_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30064804 - 30064909
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGCGTC
5'SS Class:
major
3'SS Sequence:
CGCCTCTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GGTCTGCTAACG
Flanking Amino Acid:
REMLRALGVQSVEELMDKAI
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.6
39.6
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
78.3
0.64
0.8
72
32.5
Minor 5ss
34.1
-1.8
3.7
48.7
47.8
Minor BPS
43
-0.6
2.3
50.98
42.7

Associated Gene:

Gene:
GLDC
Ensembl Gene ID:
ENSAPLG00000012359
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038095
30023988 - 30065520
41533
ENSAPLT00000018482
30024169 - 30065520
41352
ENSAPLT00000012975
30023988 - 30065520
41533