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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30094676_30114894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30094676 - 30114894
Intron Length:
20219

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCGTGG
5'SS Class:
major
3'SS Sequence:
TTTGAATTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTTTTTTGAATT
Flanking Amino Acid:
RARPSAHPGQVIPPKEWKPR
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.2
0.24
1.2
48.5
44.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
77.5
0.62
0.9
74.6
40
Minor 5ss
35.2
-1.7
3.4
46.9
48.5
Minor BPS
73.1
0.8
1.3
88.05
30.7

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012812
30094461 - 30364621
270161