About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30099354_30102802_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
30099354 - 30102802
Intron Length:
3449

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGTTAGT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTGTTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
70.7
41.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
93.8
0.99
0.6
92.5
25.7
Minor 5ss
30.7
-2.2
3
42.5
44.3
Minor BPS
59.9
0.39
1.6
78.46
39

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020914
30098761 - 30364621
265861