About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30115071_30117575_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30115071 - 30117575
Intron Length:
2505

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TTTGCCTTACCT
Flanking Amino Acid:
KEFKQLANSDKYCTPRHIAY
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
82.5
29.7
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
89
0.88
0.6
84.5
23.3
Minor 5ss
47.1
-0.3
2.5
59.7
39.1
Minor BPS
74.6
0.85
1.7
91.67
38.1

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022013
30094461 - 30364621
270161
ENSAPLT00000020914
30098761 - 30364621
265861
ENSAPLT00000012812
30094461 - 30364621
270161