About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30117691_30125350_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30117691 - 30125350
Intron Length:
7660

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGCATA
5'SS Class:
major
3'SS Sequence:
TTATCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATTTATTAATA
Flanking Amino Acid:
ADINGSIYDEGIEEWNIAHL
Intron Amino Acid Position:
159

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1
73.4
37.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
89.9
0.9
0.7
88.6
28.1
Minor 5ss
52.8
0.09
2.4
66
39.5
Minor BPS
69.2
0.6
1.5
77.45
32.8

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022013
30094461 - 30364621
270161
ENSAPLT00000020914
30098761 - 30364621
265861
ENSAPLT00000012812
30094461 - 30364621
270161