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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30145726_30150434_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
30145726 - 30150434
Intron Length:
4709

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
GTAAATGCTATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTTTTTGTAAAT
Flanking Amino Acid:
LKKYGIPFDKVTQEAGEFII
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
58.9
0.2
1
50.7
43.4
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
59.7
0.38
2.1
84.29
36.6

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020914
30098761 - 30364621
265861
ENSAPLT00000012812
30094461 - 30364621
270161
ENSAPLT00000022013
30094461 - 30364621
270161