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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30268218_30269028_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30268218 - 30269028
Intron Length:
811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTATTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAACT
Flanking Amino Acid:
ICTLLMPYYKPDNHAEEGST
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.9
77.9
38.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
85.6
0.8
0.8
77.1
41.6
Minor 5ss
38.7
-1.3
2.8
47.8
47.9
Minor BPS
88.9
1.3
0.8
99.22
22

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020914
30098761 - 30364621
265861
ENSAPLT00000012812
30094461 - 30364621
270161
ENSAPLT00000022013
30094461 - 30364621
270161