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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30290197_30295946_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30290197 - 30295946
Intron Length:
5750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTGCTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAC
U12 Branch Point Sequence:
GTATTCTTGACT
Flanking Amino Acid:
GGALKETTDKKWAHVMCAIA
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
73.9
0.59
1
65.3
41.6
Major PPT
80.1
0.68
0.8
75.1
33.3
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
76
0.9
1.1
84.43
35.8

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022013
30094461 - 30364621
270161
ENSAPLT00000020914
30098761 - 30364621
265861
ENSAPLT00000012812
30094461 - 30364621
270161