Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_3031419_3033156_R

Intron Information:

Intron Rank:

131449

Intron Class:

major

Intron Phase:

Intron Coordinates:

3031419 - 3033156

Intron Length:

1738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTTGTTTG

5'SS Class:

major

3'SS Sequence:

GGTTTTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

GATCAACTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.3

0.62

1.1

72.6

39.2

Major BPS

73.8

0.59

0.9

26.8

Major PPT

81.8

0.72

0.8

77.2

37.1

Minor 5ss

46.3

-0.4

2.4

58.6

Minor BPS

44.4

-0.3

63.29

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017923

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043240

3030705 - 3033191

2487