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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_30335615_30338473_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
30335615 - 30338473
Intron Length:
2859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGATTTTATTT
Flanking Amino Acid:
CCRHKINQNVVKKVAFEVGS
Intron Amino Acid Position:
885

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
91.7
0.94
0.7
84.7
35.8
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
55
0.23
1.6
71.47
40.5

Associated Gene:

Gene:
KDM4C
Ensembl Gene ID:
ENSAPLG00000012301
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022013
30094461 - 30364621
270161