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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_307108_325041_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
307108 - 325041
Intron Length:
17934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTAG
5'SS Class:
major
3'SS Sequence:
TTTTGTTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
GTGCCCTTAACT
Flanking Amino Acid:
KPLPSAASQCSFEDADSAVD
Intron Amino Acid Position:
175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
69.7
37.2
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85
0.79
0.7
84.8
30
Minor 5ss
42.1
-0.9
2.8
55.1
43.4
Minor BPS
79.7
1.01
1.2
86.68
38.7

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827
ENSAPLT00000003753
161360 - 353765
192406