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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31345164_31349904_F

Intron Information:

Intron Rank:
134357
Intron Class:
major
Intron Phase:
Intron Coordinates:
31345164 - 31349904
Intron Length:
4741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
AGTTACATCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
68.3
0.41
1
63.5
41.9
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
66.5
0.51
1.7
79.77
36.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022218
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030054
31344896 - 31350710
5815