Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31793007_31797272_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31793007 - 31797272

Intron Length:

4266

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATTAGGT

5'SS Class:

major

3'SS Sequence:

TTTCCTTCTATAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTAAC

U12 Branch Point Sequence:

TTTCCTTCTATA

Flanking Amino Acid:

GKKVSNQRFEVIEFDDGSGS

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

64.4

39.9

Major BPS

74.5

0.61

1.1

75.6

36.6

Major PPT

84.9

0.79

0.6

80.7

24.7

Minor 5ss

38.3

-1.3

3.4

56.7

47.4

Minor BPS

0.02

1.8

68.86

37.3

Associated Gene:

Gene:

PTPRD

Ensembl Gene ID:

ENSAPLG00000012170

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031347

31792797 - 31873391

80595

ENSAPLT00000019782

31790814 - 32026461

235648

ENSAPLT00000012786

31790814 - 32026461

235648

ENSAPLT00000046203

31789627 - 32026461

236835