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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31797415_31873026_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31797415 - 31873026
Intron Length:
75612

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
AATCTGTTAAAT
Flanking Amino Acid:
SVSTRLTVLREDQIPRGFPT
Intron Amino Acid Position:
112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
29.3
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
89.8
0.89
0.7
85
29
Minor 5ss
43
-0.8
2.8
56.6
41.9
Minor BPS
49.4
0.03
2.1
70.25
40.1

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031347
31792797 - 31873391
80595
ENSAPLT00000019782
31790814 - 32026461
235648
ENSAPLT00000012786
31790814 - 32026461
235648
ENSAPLT00000046203
31789627 - 32026461
236835