Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31873216_31875322_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31873216 - 31875322

Intron Length:

2107

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTAT

5'SS Class:

strong_major

3'SS Sequence:

ATTATCCACCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

TTCTTTCTAATC

Flanking Amino Acid:

NNGRIKQLRSGGTPIRGALQ

Intron Amino Acid Position:

175

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.7

0.98

0.8

84.7

28.2

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

68.6

0.42

59.7

41.3

Minor 5ss

38.4

-1.3

3.4

49.2

Minor BPS

59.2

0.27

1.6

69.85

36.3

Associated Gene:

Gene:

PTPRD

Ensembl Gene ID:

ENSAPLG00000012170

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012786

31790814 - 32026461

235648