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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31882111_31893999_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31882111 - 31893999
Intron Length:
11889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTCTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
CACTACTAAAAT
Flanking Amino Acid:
SDIQVITQTGVPGQPLNFKA
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
68.8
43.8
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
89.1
0.88
0.6
89
20.2
Minor 5ss
37.2
-1.4
3
46.7
48.6
Minor BPS
47.7
-0
2
63.19
46.4

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046203
31789627 - 32026461
236835
ENSAPLT00000019782
31790814 - 32026461
235648
ENSAPLT00000012786
31790814 - 32026461
235648