Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31894134_31895456_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31894134 - 31895456

Intron Length:

1323

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGAA

5'SS Class:

strong_major

3'SS Sequence:

TCCTTACCTGTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAT

U12 Branch Point Sequence:

CATTCCTTACCT

Flanking Amino Acid:

VYKDGEHGEEQRVSTEPTTS

Intron Amino Acid Position:

547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

80.4

26.8

Major BPS

76.6

0.66

1.1

75.9

36.3

Major PPT

75.7

0.58

0.8

70.4

29.4

Minor 5ss

29.7

-2.3

3.3

37.8

Minor BPS

73.2

0.81

1.6

85.03

41.4

Associated Gene:

Gene:

PTPRD

Ensembl Gene ID:

ENSAPLG00000012170

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046203

31789627 - 32026461

236835

ENSAPLT00000019782

31790814 - 32026461

235648

ENSAPLT00000012786

31790814 - 32026461

235648