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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31895602_31899010_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
31895602 - 31899010
Intron Length:
3409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAGGTGTC
5'SS Class:
major
3'SS Sequence:
CTACTGAAATTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CCTCCTTTAACC
Flanking Amino Acid:
AEISARTMQSKPSAPPQDIS
Intron Amino Acid Position:
595

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
75.1
34.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
54.3
0.1
1
53
40.4
Minor 5ss
37.6
-1.4
3.6
51.8
39.7
Minor BPS
70.7
0.63
1.3
71.26
40.4

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012786
31790814 - 32026461
235648