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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31899317_31900359_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31899317 - 31900359
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTTGC
5'SS Class:
major
3'SS Sequence:
GATGTTGTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTGCCTGTAATT
Flanking Amino Acid:
LAVLIRTDEDVPSGPPRKVE
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
67.6
38.6
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
72
0.49
1.1
61.8
48.3
Minor 5ss
46.8
-0.3
2.5
58.3
41.6
Minor BPS
50.6
0.1
2
69.66
41.9

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012786
31790814 - 32026461
235648