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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31949515_31950020_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31949515 - 31950020
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTTCGTTTT
5'SS Class:
major
3'SS Sequence:
TCCTGTACAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTAAATT
Flanking Amino Acid:
SGYLGNLHSSSMASHPPIPI
Intron Amino Acid Position:
914

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
73.9
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
67.8
0.4
1
62.5
37.3
Minor 5ss
43.1
-0.8
3
59.7
39
Minor BPS
63.7
0.51
1.6
79.64
37.1

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019782
31790814 - 32026461
235648