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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31960028_31969721_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31960028 - 31969721
Intron Length:
9694

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TAATCATTCATC
Flanking Amino Acid:
HSRVLLSAIEGIPGSDYINA
Intron Amino Acid Position:
1385

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.7
37.2
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
88.3
0.86
0.6
84.7
22.9
Minor 5ss
31.6
-2.1
3.1
40
45.7
Minor BPS
51.2
0.02
2
65.8
39.6

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012786
31790814 - 32026461
235648
ENSAPLT00000046203
31789627 - 32026461
236835
ENSAPLT00000019782
31790814 - 32026461
235648