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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_31990916_32008631_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31990916 - 32008631
Intron Length:
17716

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TCATTTCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
ATGTTTTTACTC
Flanking Amino Acid:
PDAGPMVVHCSAGVGRTGCF
Intron Amino Acid Position:
1535

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
82.5
0.73
0.7
81.4
30.4
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
55.7
0.16
1.5
63.28
37.3

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046203
31789627 - 32026461
236835
ENSAPLT00000019782
31790814 - 32026461
235648
ENSAPLT00000012786
31790814 - 32026461
235648