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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32017702_32021873_F

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32017702 - 32021873
Intron Length:
4172

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTGCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
TTTTCTTCTATT
Flanking Amino Acid:
GQDGPISVHCSAGVGRTGVF
Intron Amino Acid Position:
1826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
68.4
0.41
1
62.9
42.4
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
61.5
0.44
1.8
83.99
37

Associated Gene:

Gene:
PTPRD
Ensembl Gene ID:
ENSAPLG00000012170
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046203
31789627 - 32026461
236835
ENSAPLT00000019782
31790814 - 32026461
235648
ENSAPLT00000012786
31790814 - 32026461
235648