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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32259276_32260244_F

Intron Information:

Intron Rank:
141442
Intron Class:
major
Intron Phase:
Intron Coordinates:
32259276 - 32260244
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
GATGTCATTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATGTCATTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
84.4
0.85
1
84
34.5
Major PPT
71
0.47
1
62.4
42.9
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
47.7
-0.3
2
56.34
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026165
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047570
32258404 - 32260407
2004