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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32404057_32404775_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32404057 - 32404775
Intron Length:
719

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTCACTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAAAAT
U12 Branch Point Sequence:
TCCACCTTCACT
Flanking Amino Acid:
MSFFPSLSEEAEVDVRD
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
54
0.1
1
59.7
32.6
Major PPT
83.8
0.76
0.8
80.6
31
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
62.4
0.47
1.9
76.23
46.3

Associated Gene:

Gene:
BNC2
Ensembl Gene ID:
ENSAPLG00000008295
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024465
32403312 - 32650976
247665