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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32531246_32549796_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32531246 - 32549796
Intron Length:
18551

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TTTCCCTTATAT
Flanking Amino Acid:
DQCKHGWVAHALDKLSTQHL
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
89.8
0.89
0.6
88
22
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
68.6
0.66
1.7
87.22
37.8

Associated Gene:

Gene:
BNC2
Ensembl Gene ID:
ENSAPLG00000008295
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030772
32384373 - 32650976
266604
ENSAPLT00000024465
32403312 - 32650976
247665
ENSAPLT00000008606
32498014 - 32650976
152963
ENSAPLT00000044970
32373166 - 32650976
277811
ENSAPLT00000033239
32373166 - 32686707
313542