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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32550033_32624533_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32550033 - 32624533
Intron Length:
74501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATATGGCCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
GTTTCTTTGATA
Flanking Amino Acid:
RDYVRGYILQDAAGKVLDRW
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
84
0.85
0.9
75
39.9
Major PPT
62.8
0.29
1
52.2
43.1
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
75.1
0.78
1.1
78.69
31.2

Associated Gene:

Gene:
BNC2
Ensembl Gene ID:
ENSAPLG00000008295
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024465
32403312 - 32650976
247665
ENSAPLT00000008606
32498014 - 32650976
152963
ENSAPLT00000044970
32373166 - 32650976
277811
ENSAPLT00000033239
32373166 - 32686707
313542
ENSAPLT00000030772
32384373 - 32650976
266604