About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32650764_32686653_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32650764 - 32686653
Intron Length:
35890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCAAC
5'SS Class:
major
3'SS Sequence:
TTTGATCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TCTCTTTTGATC
Flanking Amino Acid:
PGSLMFNSVSSISRRSSGD*
Intron Amino Acid Position:
1028

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.8
38
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
79.8
0.67
0.9
70.5
40.9
Minor 5ss
34.7
-1.7
2.9
43.8
43.8
Minor BPS
60.3
0.3
1.2
65.73
34.4

Associated Gene:

Gene:
BNC2
Ensembl Gene ID:
ENSAPLG00000008295
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033239
32373166 - 32686707
313542