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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_328244_338254_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
328244 - 338254
Intron Length:
10011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAGAT
U12 Branch Point Sequence:
TCTTCTGTTACA
Flanking Amino Acid:
LLDTRFELPFDIPEEEARYW
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
58.6
0.22
1.1
55.1
40.4
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
51.2
0.03
2.3
70.62
41.9

Associated Gene:

Gene:
UNC13B
Ensembl Gene ID:
ENSAPLG00000003655
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003128
161360 - 370186
208827
ENSAPLT00000003123
161360 - 370186
208827
ENSAPLT00000003753
161360 - 353765
192406