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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32863972_32873794_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32863972 - 32873794
Intron Length:
9823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTGTTATTT
Flanking Amino Acid:
CLHESENLQLYYPCPVHREK
Intron Amino Acid Position:
1219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
82.1
0.72
0.8
77.5
36.5
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
56.6
0.28
2.2
82.89
39.2

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034438
32862886 - 33024755
161870