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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32873428_32873794_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32873428 - 32873794
Intron Length:
367

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
GATGCATGATTT
Flanking Amino Acid:
CLHESENLQLMVMKRHLTKG
Intron Amino Acid Position:
1175

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
74.5
41.9
Major BPS
84.4
0.85
1
84
34.5
Major PPT
94.8
1.01
0.5
92.6
17.3
Minor 5ss
38
-1.4
3
47.2
42.5
Minor BPS
43.8
-0.3
2
60.25
43

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000033288
32852298 - 33024755
172458
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458