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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32873948_32911201_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32873948 - 32911201
Intron Length:
37254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTACTTTTTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATTTTACTT
Flanking Amino Acid:
MKSVEATLNKAMIKSFVDVY
Intron Amino Acid Position:
1124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95
1.06
0.7
93.7
19.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.9
0.61
1
78.3
33.7
Minor 5ss
39.4
-1.2
3.1
57.6
46.6
Minor BPS
61.4
0.44
1.6
79.53
37.3

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022662
32852298 - 33024755
172458