Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32892908_32899013_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32892908 - 32899013

Intron Length:

6106

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTTAGAGTC

5'SS Class:

major

3'SS Sequence:

CACTTTATTACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAC

U12 Branch Point Sequence:

TTCACTTTATTA

Flanking Amino Acid:

KGGPEVVAFQRPEWCFFWNL

Intron Amino Acid Position:

1117

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

1.1

74.5

34.2

Major BPS

82.3

0.8

83.6

25.8

Major PPT

0.65

0.9

72.6

Minor 5ss

31.3

-2.1

3.3

42.1

44.8

Minor BPS

0.25

1.6

67.4

39.9

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000012443

32892854 - 33024718

131865