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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32899146_32911201_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32899146 - 32911201

Intron Length:

12056

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCCCTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATTGAT

U12 Branch Point Sequence:

TTACCATTGATG

Flanking Amino Acid:

MKSVEATLNKVRDQTLLSQT

Intron Amino Acid Position:

1073

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

1.06

0.7

93.7

19.9

Major BPS

76.2

0.65

39.8

Major PPT

87.4

0.84

0.6

86.4

20.3

Minor 5ss

39.4

-1.2

3.1

57.6

46.6

Minor BPS

54.6

-0

1.7

62.24

39.5

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000041065

32852298 - 33024755

172458

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000033288

32852298 - 33024755

172458

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000044664

32852311 - 33024755

172445