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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32911257_32913953_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32911257 - 32913953
Intron Length:
2697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCGCT
5'SS Class:
major
3'SS Sequence:
GCTCTTACAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATT
Flanking Amino Acid:
DAESALCMAAKHKELIISHM
Intron Amino Acid Position:
1054

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
68.6
36.4
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
64.1
0.32
0.9
59.4
35.6
Minor 5ss
35.2
-1.7
3.4
48.1
42
Minor BPS
71
0.74
1.5
85.63
34.2

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000044664
32852311 - 33024755
172445
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458