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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32914100_32939891_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32914100 - 32939891

Intron Length:

25792

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATGA

5'SS Class:

strong_major

3'SS Sequence:

TGTCTGCTTGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAGTAAC

U12 Branch Point Sequence:

TGACAAGTAACT

Flanking Amino Acid:

KNQVLSETVKRLFEAKMELR

Intron Amino Acid Position:

1006

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

33.3

Major BPS

57.9

0.2

1.1

59.4

34.8

Major PPT

79.8

0.67

0.9

73.2

37.2

Minor 5ss

37.3

-1.4

47.8

47.6

Minor BPS

44.1

-0.3

2.3

43.4

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022662

32852298 - 33024755

172458

ENSAPLT00000041065

32852298 - 33024755

172458

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000044664

32852311 - 33024755

172445