About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32940078_32941802_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32940078 - 32941802
Intron Length:
1725

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTCCCTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
TTTCCCTTATCA
Flanking Amino Acid:
QEQLNMFKQSKLITHERFES
Intron Amino Acid Position:
944

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
82.3
0.73
0.8
82
28.3
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
75.4
0.79
1.5
85.19
34.1

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000044664
32852311 - 33024755
172445