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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32941986_32942765_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32941986 - 32942765
Intron Length:
780

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGCATG
5'SS Class:
major
3'SS Sequence:
TGTTTACTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTACTAACA
Flanking Amino Acid:
AGFCDRLPIMKSIASLQKQI
Intron Amino Acid Position:
883

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
67.1
43.8
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
75.9
0.58
1
70.8
38.9
Minor 5ss
49.2
-0
2.5
62.7
43.2
Minor BPS
56.8
0.21
1.9
74.1
36.8

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000044664
32852311 - 33024755
172445
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458