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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32947600_32948273_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32947600 - 32948273

Intron Length:

674

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGCTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTTTTAT

U12 Branch Point Sequence:

TTTTGTTTCACA

Flanking Amino Acid:

GDSKGKHNLSRHKEEQIDCV

Intron Amino Acid Position:

768

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

73.9

32.9

Major BPS

78.7

0.71

1.2

71.7

44.6

Major PPT

0.86

0.7

83.5

31.6

Minor 5ss

44.9

-0.5

2.8

55.6

43.2

Minor BPS

59.4

0.29

2.2

78.6

38.6

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022662

32852298 - 33024755

172458

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000033288

32852298 - 33024755

172458

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000044664

32852311 - 33024755

172445

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000041065

32852298 - 33024755

172458