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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32948776_32953958_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32948776 - 32953958
Intron Length:
5183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGC
5'SS Class:
strong_major
3'SS Sequence:
CCTATTATCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTGCCCCTATTA
Flanking Amino Acid:
LLGEVHARAQEYQETAEKNK
Intron Amino Acid Position:
601

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.5
40
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
74
0.54
0.9
65.5
39.7
Minor 5ss
43.2
-0.7
3.1
58.8
46.1
Minor BPS
46.7
-0.2
1.9
57.23
42.5

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000044664
32852311 - 33024755
172445