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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32956249_32958162_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32956249 - 32958162
Intron Length:
1914

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTACCA
5'SS Class:
major
3'SS Sequence:
TCTTTTGTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCATATATAACA
Flanking Amino Acid:
LTRAYQKDMEEKLTFLHGLY
Intron Amino Acid Position:
482

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
59.8
38.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
84.8
0.78
0.8
83.9
31.1
Minor 5ss
38.4
-1.3
3
49.4
46.3
Minor BPS
53.3
0.1
1.8
66.13
40

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000044664
32852311 - 33024755
172445
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458