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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32968360_32978895_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

32968360 - 32978895

Intron Length:

10536

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGACAA

5'SS Class:

strong_major

3'SS Sequence:

CTGTCAAATAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTCAAAT

U12 Branch Point Sequence:

CTCCTGTCAAAT

Flanking Amino Acid:

RRELQEELAMAKKHQVFLTE

Intron Amino Acid Position:

316

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

69.6

36.5

Major BPS

59.5

0.24

1.2

67.3

37.8

Major PPT

54.9

0.11

1.1

53.8

38.8

Minor 5ss

31.4

-2.1

3.1

36.2

41.7

Minor BPS

-0.5

2.2

58.13

44.8

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000044664

32852311 - 33024755

172445

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000041065

32852298 - 33024755

172458

ENSAPLT00000022662

32852298 - 33024755

172458

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000033288

32852298 - 33024755

172458