Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32979035_32987817_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32979035 - 32987817

Intron Length:

8783

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTTAT

5'SS Class:

strong_major

3'SS Sequence:

TGAAACTTTCCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

TTTTGATTAATA

Flanking Amino Acid:

NAQENLEKLSILKREYFSTN

Intron Amino Acid Position:

269

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

86.1

24.7

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

69.4

0.44

58.5

46.7

Minor 5ss

44.3

-0.6

2.9

62.8

Minor BPS

64.2

0.44

80.44

35.6

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000044664

32852311 - 33024755

172445

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000041065

32852298 - 33024755

172458

ENSAPLT00000022662

32852298 - 33024755

172458

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000033288

32852298 - 33024755

172458