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Intron Name: Anas_platyrhynchos_platyrhynchos_Z_32987979_32989310_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32987979 - 32989310

Intron Length:

1332

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TATCACTTTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTGTTTTTATCA

Flanking Amino Acid:

ESKFNSEIIQLRIRDLEGAL

Intron Amino Acid Position:

216

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.7

0.94

0.9

78.8

38.3

Major BPS

96.5

1.15

0.6

34.2

Major PPT

80.2

0.68

0.9

73.5

36.3

Minor 5ss

45.6

-0.5

2.9

46.2

Minor BPS

65.1

0.47

1.5

74.19

38.2

Associated Gene:

Gene:

CCDC171

Ensembl Gene ID:

ENSAPLG00000011943

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031244

32852298 - 33024755

172458

ENSAPLT00000044664

32852311 - 33024755

172445

ENSAPLT00000026989

32852311 - 33024897

172587

ENSAPLT00000041065

32852298 - 33024755

172458

ENSAPLT00000022662

32852298 - 33024755

172458

ENSAPLT00000034438

32862886 - 33024755

161870

ENSAPLT00000012443

32892854 - 33024718

131865

ENSAPLT00000033288

32852298 - 33024755

172458