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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33007764_33018998_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
33007764 - 33018998
Intron Length:
11235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTAAACAATAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
TTTTCTGTAAAC
Flanking Amino Acid:
DVKTRLVELQASNEKLQQKV
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.7
1.12
0.6
91.3
19.2
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
55.4
0.12
1
49.3
38
Minor 5ss
44.8
-0.6
2.8
61.1
43.8
Minor BPS
62.3
0.37
2.1
79.33
36

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000044664
32852311 - 33024755
172445
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458