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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33019174_33021275_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33019174 - 33021275
Intron Length:
2102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTTTTCTGAAAC
Flanking Amino Acid:
LDIAVKHHQELSNCKIQIVK
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.9
0.85
0.7
81.4
35.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
64
0.42
1.5
73.4
36.7

Associated Gene:

Gene:
CCDC171
Ensembl Gene ID:
ENSAPLG00000011943
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031244
32852298 - 33024755
172458
ENSAPLT00000044664
32852311 - 33024755
172445
ENSAPLT00000026989
32852311 - 33024897
172587
ENSAPLT00000041065
32852298 - 33024755
172458
ENSAPLT00000022662
32852298 - 33024755
172458
ENSAPLT00000034438
32862886 - 33024755
161870
ENSAPLT00000012443
32892854 - 33024718
131865
ENSAPLT00000033288
32852298 - 33024755
172458