About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_33067866_33068051_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33067866 - 33068051
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGATCA
5'SS Class:
strong_major
3'SS Sequence:
ACTTCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATCACTTCAATT
Flanking Amino Acid:
HTEMILTLKKIRKFKVSQVI
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.5
27.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.6
0.58
0.9
71.3
37.9
Minor 5ss
32.8
-2
3
39.5
45.9
Minor BPS
57.1
0.3
1.6
71.13
40.3

Associated Gene:

Gene:
PSIP1
Ensembl Gene ID:
ENSAPLG00000011966
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012465
33038923 - 33073963
35041